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Protein Metrics Inc byonic software
Byonic Software, supplied by Protein Metrics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/byonic+software/byonic+software/pmc13156753-85-6-12
Average 86 stars, based on 1 article reviews
byonic software - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Glycoproteomics:

Article Title: Use of amino acids to enhance signal in mass spectral analyses
Article Snippet: .. Five most abundant precursors were selected for data-dependent MS2 scan, where NCE was set to 27, resolution=17,500, AGC target=5e5, maximum IT=250 ms. Data Processing for Glycopeptide Identification Glycopeptide identification was performed using Byonic software in Protein Metrics suite by searching the raw files against protein sequence and a build-in glycan database containing 132 human N-linked glycans or 70 common O-linked glycans. ..

Software:

Article Title: Use of amino acids to enhance signal in mass spectral analyses
Article Snippet: .. Five most abundant precursors were selected for data-dependent MS2 scan, where NCE was set to 27, resolution=17,500, AGC target=5e5, maximum IT=250 ms. Data Processing for Glycopeptide Identification Glycopeptide identification was performed using Byonic software in Protein Metrics suite by searching the raw files against protein sequence and a build-in glycan database containing 132 human N-linked glycans or 70 common O-linked glycans. ..

Article Title: Inhibition of glycosphingolipid synthesis overcomes the steric hindrance of CD30 N-glycans to augment CD30-targeted immunotherapeutic efficacy.
Article Snippet: CD30-targeted chimeric antigen receptor (CAR) T-cell therapy faces clinical challenges in classical Hodgkin lymphoma (cHL).. While current optimization strategies focus on CAR design, manufacturing protocols, and preconditioning regimens, tumor-intrinsic resistance mechanisms remain poorly understood.. Our study revealed that CD30 in cHL cells is associated with N-glycans at Asn101 and Asn276, which are essential for protein stability but do not affect cell proliferation or apoptosis.

Article Title: Comparative N-Glycoproteomic Analysis of Transparent and Opaque Pigeon Egg Albumen.
Article Snippet: .. Protein Identification and Quantification Fragmentation spectra of glycopeptides were searched against the Columba livia uniProt proteome database using Byonic software (version 2.13.17, Protein Metrics, Cupertino, CA, USA). ..

Article Title: Identification of MHC Ligands Through Allele-Guided Isolation Combined With Machine Learning for Improved MHC Assignment Using ARDisplay-I
Article Snippet: .. Mass spectrometry data were processed using Byonic software ( ) (version 4.5.2, Protein Metrics) and PEAKS software ( ) (version 11, Bioinformatics Solutions Inc.) through a custom-built computer server. ..

Article Title: Artificial Neural Network-Guided Discovery of Antioxidant Peptides from Peony ( Paeonia ostii ) Seed Meal: Peptidomics, Molecular Mechanism, and Cellular Validation.
Article Snippet: Briefly, the analysis was carried out on an Ultimate 3000 system coupled to a Q ExactiveTM Hybrid Quadrupole-OrbitrapTM mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA). .. The acquired raw data were processed using Byonic software (version 4.2.4; Protein Metrics Inc., Cupertino, CA, USA). ..

Article Title: Identification of MHC ligands through allele-guided isolation combined with machine learning for improved MHC assignment using ARDisplay-I.
Article Snippet: .. Mass spectrometry data processing Mass spectrometry data were processed using Byonic software [34] (version 4.5.2, Protein Metrics, Palo Alto, CA) and PEAKS software [35] (version 11, Bioinformatics Solutions Inc.) through a custom-built computer server. ..

Article Title: High-throughput simultaneous quantification of glycopeptides and phosphopeptides enabled by 12-plex DiLeu isobaric tags and dual-functional Titanium(IV)-IMAC material.
Article Snippet: • A novel, multiplexed strategy to simultaneously analyze N-glycosylation and phosphorylation for the first time.. • Integration of a one-tube workflow for improved efficiency.. • Comprehensive quantification of Nglycosylation and phosphorylation in APP/PS1 mouse brains.

Article Title: Comparative N-Glycoproteomic Analysis of Transparent and Opaque Pigeon Egg Albumen
Article Snippet: .. Fragmentation spectra of glycopeptides were searched against the Columba livia uniProt proteome database using Byonic software (version 2.13.17, Protein Metrics, Cupertino, CA, USA). ..

Sequencing:

Article Title: Use of amino acids to enhance signal in mass spectral analyses
Article Snippet: .. Five most abundant precursors were selected for data-dependent MS2 scan, where NCE was set to 27, resolution=17,500, AGC target=5e5, maximum IT=250 ms. Data Processing for Glycopeptide Identification Glycopeptide identification was performed using Byonic software in Protein Metrics suite by searching the raw files against protein sequence and a build-in glycan database containing 132 human N-linked glycans or 70 common O-linked glycans. ..

Mass Spectrometry:

Article Title: Identification of MHC Ligands Through Allele-Guided Isolation Combined With Machine Learning for Improved MHC Assignment Using ARDisplay-I
Article Snippet: .. Mass spectrometry data were processed using Byonic software ( ) (version 4.5.2, Protein Metrics) and PEAKS software ( ) (version 11, Bioinformatics Solutions Inc.) through a custom-built computer server. ..

Article Title: Identification of MHC ligands through allele-guided isolation combined with machine learning for improved MHC assignment using ARDisplay-I.
Article Snippet: .. Mass spectrometry data processing Mass spectrometry data were processed using Byonic software [34] (version 4.5.2, Protein Metrics, Palo Alto, CA) and PEAKS software [35] (version 11, Bioinformatics Solutions Inc.) through a custom-built computer server. ..

Phospho-proteomics:

Article Title: High-throughput simultaneous quantification of glycopeptides and phosphopeptides enabled by 12-plex DiLeu isobaric tags and dual-functional Titanium(IV)-IMAC material.
Article Snippet: • A novel, multiplexed strategy to simultaneously analyze N-glycosylation and phosphorylation for the first time.. • Integration of a one-tube workflow for improved efficiency.. • Comprehensive quantification of Nglycosylation and phosphorylation in APP/PS1 mouse brains.



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